Several GitHub repositories have been created for the source code of the tools and models developed for EN-TEx
including the Chromosome Painter, Explorer Tool, AlleleSeq2 pipeline and the transferQTL model. (Another github also has transformer-model code associated with application #3.)
Rozowsky, J., Gao, J., Borsari, B., Yang, Y. T., Galeev, T., Gürsoy, G., ... & Gerstein, M. (2023). The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell, 186(7), 1493-1511.
Extra files that are related to EN-TEx but not included in the paper.